Objective To explore the morbidity of primary liver cancer (hereinafter referred to as liver cancer) in individuals with HBV basal core promoter (BCP) A1762 and G1764 amphimutation. Methods Follow⁃up of liver cancer was performed once every 6 months on 1138 HBV BCP A1762 and G1764 amphimutation individuals aged >40 years in Long’an County, Guangxi Zhuang Autonomous Region, for a continuous 4⁃year follow⁃up. The incidence rate of liver cancer in individuals with HBV BCP A1762 and G1764 amphimutation in various age groups and genders was recorded, and the check⁃up status was also recorded in follow⁃up populations. Results A total of 4378.49 person⁃years were followed up. The incidence rate of liver cancer was 1027.76/100 000 person⁃years, with higher incidence rate in males than females (P<0.05). There was no correlation trend between the incidence rate of liver cancer and age (P>0.05). The abnormal rate of color Doppler ultrasound was 50.04%, mainly manifested as coarse liver parenchymal echoes (49.46%) and fatty liver (23.52%). The positive rate of alpha fetoprotein was 3.08%. The check⁃up participation rate was 48.32%, with 791 individuals having participated in at least one check⁃up. Among them, those who had undergone eight times of check⁃up accounted for the highest proportion (26.30%), while those who had only participated once made up the lowest proportion (5.44%). Conclusion The incidence rate of liver cancer in individuals with HBV BCP A1762 and G1764 amphimutation is relatively high, and the incidence rate is higher in males than in females. Early screening work for liver cancer among high⁃risk populations should be strengthened, and the efficiency of early diagnosis and treatment of liver cancer should be improved.