Objective To investigate the effects of different altitudes on intestinal barrier function in rats, and to analyze the correlation between intestinal fatty acid binding protein (I⁃FABP) levels in blood and urine and intestinal barrier dysfunction. Methods Eighteen healthy male SD rats were randomly divided into control group, 3500 m plateau group, or 5000 m plateau group, with 6 rats in each group. A rat model of acute high⁃altitude intestinal barrier dysfunction was established. The structural changes of jejunal villi in the three groups were observed using light and electron microscopy. The jejunal villus height and crypt depth were measured and compared between rats in the three groups. Western blot was used to detect and compare the expressions of Claudin⁃1, Occludin, and zonula occludens 1 (ZO⁃1) in jejunal tissue. ELISA was used to measure and compare serum levels of intestinal permeability markers including diamine oxidase (DAO), D⁃lactate acid (D⁃LA), lipopolysaccharide (LPS) and I⁃FABP levels in serum and urine. Pearson correlation analysis was performed to assess the correlation between serum/urine I⁃FABP levels and intestinal barrier dysfunction⁃associated indices. Results Light and scanning electron microscopy revealed that structural damage to jejunal villi in rats from both the 3500 m and 5000 m plateau groups, characterized by shortened villus height and shallower crypts. Compared to the control group, the 3500 m and 5000 m plateau groups showed decreased jejunal villus height, crypt depth, and expressions of Claudin⁃1, Occludin, and ZO⁃1 in jejunal tissue; in addition, these decreases were more pronounced in the 5000 m plateau group compared to the 3500 m plateau group (P<0.05). Serum levels of DAO, D⁃LA, LPS, I⁃FABP, and urine I⁃FABP level were higher in both 3500 m and 5000 m plateau groups compared to the control group, with the 5000 m plateau group showing higher levels than the 3500 m plateau group (P<0.05). Correlation analysis indicated that serum I⁃FABP level positively correlated with serum DAO and LPS levels (P<0.05). Urine I⁃FABP level positively correlated with serum I⁃FABP, DAO, LPS, and D⁃LA levels (P<0.05). Both serum and urine I⁃FABP level negatively correlated with the expressions of Claudin⁃1, Occludin, and ZO⁃1 in jejunal tissue (P<0.05). Conclusion Acute high⁃altitude exposure can lead to intestinal barrier dysfunction in rats, manifested as pathological damage to jejunal villi structure, decreased expression of tight junction proteins, and increased permeability. Serum and urine I⁃FABP levels positively correlates with intestinal barrier dysfunction, suggesting that I⁃FABP is an important biomarker reflecting intestinal mucosal injury.